publications

2023

1. Preprint

   Foundation Models for Quantitative Biomarker Discovery in Cancer Imaging

   Suraj Pai, Dennis Bontempi, Vasco Prudente, and 8 more authors

   medRxiv, 2023

   Bib HTML

   @article{pai2023foundation,
     url = {https://www.medrxiv.org/content/10.1101/2023.09.04.23294952v1},
     title = {Foundation Models for Quantitative Biomarker Discovery in Cancer Imaging},
     author = {Pai, Suraj and Bontempi, Dennis and Prudente, Vasco and Hadzic, Ibrahim and Sokac, Mateo and Chaunzwa, Tafadzwa L and Bernatz, Simon and Hosny, Ahmed and Mak, Raymond H and Birkbak, Nicolai J and others},
     journal = {medRxiv},
     pages = {2023--09},
     year = {2023},
     publisher = {Cold Spring Harbor Laboratory Press},
     dimensions = {true}
   }

2. Abstract

   PO-2125 Contrastive self-supervised learning of lung tumor imaging predicts immunotherapy response

   T Chaunzwa, S Pai, D Bontempi, and 6 more authors

   Radiotherapy and Oncology, 2023

   Bib

   @article{chaunzwa2023po,
     title = {PO-2125 Contrastive self-supervised learning of lung tumor imaging predicts immunotherapy response},
     author = {Chaunzwa, T and Pai, S and Bontempi, D and Ricciuti, B and Bernatz, S and Alessi, J and Mak, R and Awad, M and Aerts, H},
     journal = {Radiotherapy and Oncology},
     volume = {182},
     pages = {S1913--S1914},
     year = {2023},
     publisher = {Elsevier}
   }

3. Abstract

   P2. 05-08 Immunotherapy Prognostication with Thoracic CT Contrastive Self-Supervised Learning in Patients with Non-Small Cell Lung Cancer

   T Chaunzwa, SL Pai, Q Li, and 8 more authors

   Journal of Thoracic Oncology, 2023

   Bib

   @article{chaunzwa2023p2,
     title = {P2. 05-08 Immunotherapy Prognostication with Thoracic CT Contrastive Self-Supervised Learning in Patients with Non-Small Cell Lung Cancer},
     author = {Chaunzwa, T and Pai, SL and Li, Q and Ricciuti, B and Gupta, A and Achour, I and Reyes, R and Bernatz, S and Alessi, J and Bontempi, D and others},
     journal = {Journal of Thoracic Oncology},
     volume = {18},
     number = {11},
     pages = {S310--S311},
     year = {2023},
     publisher = {Elsevier}
   }

4. Frequency-Domain-Based Structure Losses for CycleGAN-Based Cone-Beam Computed Tomography Translation

   Suraj Pai, Ibrahim Hadzic, Chinmay Rao, and 5 more authors

   Sensors, 2023

   Bib

   @article{pai2023frequency,
     title = {Frequency-Domain-Based Structure Losses for CycleGAN-Based Cone-Beam Computed Tomography Translation},
     author = {Pai, Suraj and Hadzic, Ibrahim and Rao, Chinmay and Zhovannik, Ivan and Dekker, Andre and Traverso, Alberto and Asteriadis, Stylianos and Hortal, Enrique},
     journal = {Sensors},
     volume = {23},
     number = {3},
     pages = {1089},
     year = {2023},
     publisher = {MDPI}
   }

5. Synthesizing computed tomography for radiotherapy: Structured description of the challenge design

   Adrian Thummerer, Evi Huijben, Maarten Terpstra, and 7 more authors

   2023

   Bib

   @techreport{thummerer2023synthesizing,
     title = {Synthesizing computed tomography for radiotherapy: Structured description of the challenge design},
     author = {Thummerer, Adrian and Huijben, Evi and Terpstra, Maarten and Gurney-Champion, Oliver J and Afonso, MV and Pai, Suraj and Koopmans, Peter and van Eijnatten, Maureen and Perko, Zoltan and Maspero, Matteo},
     year = {2023},
     institution = {University Medical Center Utrecht (UMCU)}
   }

6. SynthRAD2023 Challenge design: Synthesizing computed tomography for radiotherapy

   Adrian Thummerer, Evi Huijben, Maarten Terpstra, and 7 more authors

   2023

   Bib

   @techreport{thummerer2023synthrad2023,
     title = {SynthRAD2023 Challenge design: Synthesizing computed tomography for radiotherapy},
     author = {Thummerer, Adrian and Huijben, Evi and Terpstra, Maarten and Gurney-Champion, Oliver J and Afonso, MV and Pai, Suraj and Koopmans, Peter and van Eijnatten, Maureen and Perko, Zoltan and Maspero, Matteo},
     year = {2023},
     institution = {University Medical Center Utrecht (UMCU)}
   }

7. Preprint

   Decoding biological age from face photographs using deep learning

   Osbert Zalay, Dennis Bontempi, Danielle S Bitterman, and 8 more authors

   medRxiv, 2023

   Bib

   @article{zalay2023decoding,
     title = {Decoding biological age from face photographs using deep learning},
     author = {Zalay, Osbert and Bontempi, Dennis and Bitterman, Danielle S and Birkbak, Nicolai and Shyr, Derek and Haugg, Fridolin and Qian, Jack M and Roberts, Hannah and Perni, Subha and Prudente, Vasco and others},
     journal = {medRxiv},
     pages = {2023--09},
     year = {2023},
     publisher = {Cold Spring Harbor Laboratory Press}
   }

2022

1. Head and neck tumor segmentation in PET/CT: the HECKTOR challenge

   Valentin Oreiller, Vincent Andrearczyk, Mario Jreige, and 8 more authors

   Medical image analysis, 2022

   Bib

   @article{oreiller2022head,
     title = {Head and neck tumor segmentation in PET/CT: the HECKTOR challenge},
     author = {Oreiller, Valentin and Andrearczyk, Vincent and Jreige, Mario and Boughdad, Sarah and Elhalawani, Hesham and Castelli, Joel and Vallieres, Martin and Zhu, Simeng and Xie, Juanying and Peng, Ying and others},
     journal = {Medical image analysis},
     volume = {77},
     pages = {102336},
     year = {2022},
     publisher = {Elsevier}
   }

2. Clinical Application of Synthetic CTs for Proton Therapy of Lung Cancer Patients

   V Taasti, D Hattu, I Hadzic, and 6 more authors

   MEDICAL PHYSICS, 2022

   Bib

   @article{taasti2022clinical,
     title = {Clinical Application of Synthetic CTs for Proton Therapy of Lung Cancer Patients},
     author = {Taasti, V and Hattu, D and Hadzic, I and Pai, S and Gooding, M and Sage, J and De Ruysscher, D and Traverso, A and Canters, R},
     journal = {MEDICAL PHYSICS},
     volume = {49},
     number = {6},
     pages = {E325--E325},
     year = {2022},
     publisher = {WILEY}
   }

2021

1. Oropharyngeal tumour segmentation using ensemble 3D PET-CT fusion networks for the HECKTOR challenge

   Chinmay Rao, Suraj Pai, Ibrahim Hadzic, and 5 more authors

   In Head and Neck Tumor Segmentation: First Challenge, HECKTOR 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4, 2020, Proceedings 1, 2021

   Bib

   @inproceedings{rao2021oropharyngeal,
     title = {Oropharyngeal tumour segmentation using ensemble 3D PET-CT fusion networks for the HECKTOR challenge},
     author = {Rao, Chinmay and Pai, Suraj and Hadzic, Ibrahim and Zhovannik, Ivan and Bontempi, Dennis and Dekker, Andre and Teuwen, Jonas and Traverso, Alberto},
     booktitle = {Head and Neck Tumor Segmentation: First Challenge, HECKTOR 2020, Held in Conjunction with MICCAI 2020, Lima, Peru, October 4, 2020, Proceedings 1},
     pages = {65--77},
     year = {2021},
     organization = {Springer International Publishing}
   }

2. Artificial intelligence in radiation therapy

   Yabo Fu, Hao Zhang, Eric D Morris, and 8 more authors

   IEEE Transactions on Radiation and Plasma Medical Sciences, 2021

   Bib

   @article{fu2021artificial,
     title = {Artificial intelligence in radiation therapy},
     author = {Fu, Yabo and Zhang, Hao and Morris, Eric D and Glide-Hurst, Carri K and Pai, Suraj and Traverso, Alberto and Wee, Leonard and Hadzic, Ibrahim and L{\o}nne, Per-Ivar and Shen, Chenyang and others},
     journal = {IEEE Transactions on Radiation and Plasma Medical Sciences},
     volume = {6},
     number = {2},
     pages = {158--181},
     year = {2021},
     publisher = {IEEE}
   }

3. Radiomics integration into a picture archiving and communication system

   Ivan Zhovannik, Suraj Pai, Talia A Silva Santos, and 6 more authors

   Physics and Imaging in Radiation Oncology, 2021

   Bib

   @article{zhovannik2021radiomics,
     title = {Radiomics integration into a picture archiving and communication system},
     author = {Zhovannik, Ivan and Pai, Suraj and da Silva Santos, Talia A and van Driel, Lars LG and Dekker, Andre and Fijten, Rianne and Traverso, Alberto and Bussink, Johan and Monshouwer, Ren{\'e}},
     journal = {Physics and Imaging in Radiation Oncology},
     volume = {20},
     pages = {30--33},
     year = {2021},
     publisher = {Elsevier}
   }

4. Delineation bias in hand-crafted radiomic features

   A Romita, I Zhovannik, S Pai, and 4 more authors

   Physica Medica: European Journal of Medical Physics, 2021

   Bib

   @article{romita2021delineation,
     title = {Delineation bias in hand-crafted radiomic features},
     author = {Romita, A and Zhovannik, I and Pai, S and Dekker, A and Pfaehler, E and Monshouwer, R and Traverso, A},
     journal = {Physica Medica: European Journal of Medical Physics},
     volume = {92},
     pages = {S137},
     year = {2021},
     publisher = {Elsevier}
   }

2020

1. Automated 3D sign language caption generation for video

   Nayan Mehta, Suraj Pai, and Sanjay Singh

   Universal Access in the Information Society, 2020

   Bib

   @article{mehta2020automated,
     title = {Automated 3D sign language caption generation for video},
     author = {Mehta, Nayan and Pai, Suraj and Singh, Sanjay},
     journal = {Universal Access in the Information Society},
     volume = {19},
     pages = {725--738},
     year = {2020},
     publisher = {Springer Berlin Heidelberg}
   }